1. Gene
  2. DDX56 - DEAD-box helicase 56 Gene

DDX56 - DEAD-box helicase 56 Gene

中文名称:死盒解旋酶 56

种属: Homo sapiens

同用名: DDX21; DDX26; NOH61

基因 ID: 54606 | 基因类型: protein coding

关于 DDX56

Cytogenetic location: 7p13 Genomic coordinates (GRCh38): 7:44,565,804-44,573,908 (from NCBI)

This gene has 12 transcripts (splice variants), 195 orthologues and 38 paralogues. Ubiquitous expression in thyroid (RPKM 15.8), lymph node (RPKM 15.1) and 25 other tissues.

功能概要

该基因编码 DEAD box 蛋白家族的一个成员。以保守基序 Asp-Glu-Ala-Asp (DEAD) 为特征的 DEAD 盒蛋白是推定的 RNA 解旋酶。它们涉及许多涉及 RNA 二级结构改变的细胞过程,例如翻译起始、核和线粒体剪接以及核糖体和剪接体组装。根据它们的分布模式,该家族的一些成员被认为参与了胚胎发生、精子发生以及细胞生长和分裂。由该基因编码的蛋白质在多核苷酸存在的情况下显示出 ATP 酶活性,并与核质 65S 前核糖体颗粒结合。该基因可能参与核糖体合成,很可能是在 60S 核糖体大亚基的组装过程中。已发现该基因编码不同异构体的多个转录变体。[RefSeq 提供,2012 年 3 月]

This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene shows ATPase activity in the presence of polynucleotides and associates with nucleoplasmic 65S preribosomal particles. This gene may be involved in ribosome synthesis, most likely during assembly of the large 60S ribosomal subunit. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2012]

DDX56 基因产物(2)

mRNA Protein Name
NM_001257189.2 NP_001244118.1 probable ATP-dependent RNA helicase DDX56 isoform 2
NM_019082.4 NP_061955.1 probable ATP-dependent RNA helicase DDX56 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables RNA stem-loop binding IDA
IDA: 通过直接分析推断
33109765 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
32296183 GOA
enables protein sequestering activity IDA
IDA: 通过直接分析推断
31340999 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in defense response to virus IDA
IDA: 通过直接分析推断
33109765 GOA
acts upstream of negative effect modulation by host of viral RNA genome replication IMP
IMP: 通过突变表型推断
33109765 GOA
involved in negative regulation of type I interferon production IDA
IDA: 通过直接分析推断
31340999 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in cytosol IDA
IDA: 通过直接分析推断
33109765 GOA
located in nucleolus IDA
IDA: 通过直接分析推断
33109765 GOA
is active in nucleus IDA
IDA: 通过直接分析推断
31340999 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

DDX56 蛋白结构

DEAD

DEAD: DEAD/DEAH box helicase (31 - 206)

Helicase_C

Helicase_C: Helicase conserved C-terminal domain (276 - 319)

Helicase_C

Helicase_C: Helicase conserved C-terminal domain (344 - 380)

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  • 547 a.a.
蛋白主名 其他名称

probable ATP-dependent RNA helicase DDX56

61-kd nucleolar helicase

直系同源

种属 基因名 来源 基因 ID
Bos taurus DDX56 VGNC VGNC:27978
Rattus norvegicus DDX56 RGD RGD:1303195
Canis familiaris DDX56 VGNC VGNC:39866
Mus musculus DDX56 MGD MGI:1277172
Felis catus DDX56 VGNC VGNC:61417