Reliable and Sensitive Detection of Carbonylated Proteins by Oxime Blot

Oxidative protein damage is important in various biological processes and age-related diseases. Protein carbonylation is the predominant and most frequently studied form of protein oxidation. It is most frequently detected following its derivatization with 2,4-dinitrophenylhydrazine (DNPH) hapten, followed by its detection with an anti-DNP antibody. However, when used to detect protein carbonylation by western blotting, this method suffers from diminished sensitivity, distortion of protein migration patterns, and unsatisfactory representation of low-abundance proteins. This is due to the poor solubility of DNPH in typical buffer solutions, the acidic protein precipitation due to the use of strong acid for its dissolution, the instability in solution, and the distorted protein migration patterns introduced by an additional salt content generated by the required pH adjustment prior to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). To address the DNPH method limitations, a new Oxime blot technique was developed. This method is based on forming the stable oxime bonds between the protein carbonyl groups and biotin-aminooxy probe in the presence of a p-phenylenediamine (pPDA) catalyst at neutral pH conditions. The derivatization reaction reaches a plateau within 3 h. It ensures efficient and complete derivatization of carbonylated proteins, which are separated by SDS-PAGE without additional manipulation and detected with avidin-HRP and enhanced chemiluminescence (ECL) in western blotting. The Oxime blot protocol allows researchers to reliably and sensitively detect carbonylated proteins and provides a valuable tool for studying oxidative stress in diverse biological settings. Key features • This method enables the sensitive and reliable detection of protein carbonylation in various biological samples. • The chemically stable oxime bond forms quickly and efficiently, reaching its plateau level after 3 h, enabling relative carbonylation quantification. • Carbonylation derivatization at low salt content and neutral pH ensures good SDS-PAGE protein migration without any protein loss. • This method integrates well with detecting specific protein carbonylation following its immunoprecipitation.

2; 4 dinitrophenylhydrazine (DNPH); Age-related diseases; Alpha-synuclein; Biotin-aminooxy; Carbonylated proteins’ western blot; Oxidative stress; Oxime blot; Parkinson’s disease.