1. Academic Validation
  2. SMAD3 and p300 complex scaffolding by long non-coding RNA LIMD1-AS1 promotes TGF-β-induced breast cancer cell plasticity

SMAD3 and p300 complex scaffolding by long non-coding RNA LIMD1-AS1 promotes TGF-β-induced breast cancer cell plasticity

  • Nucleic Acids Res. 2025 Aug 27;53(16):gkaf841. doi: 10.1093/nar/gkaf841.
Chuannan Fan 1 Davy Cats 2 Miriam Selle 3 Olga Khorosjutina 3 Soniya Dhanjal 3 Bernhard Schmierer 3 Hailiang Mei 2 Peter Ten Dijke 1 Qian Wang 1
Affiliations

Affiliations

  • 1 Oncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center,Leiden, 2300 RC, the Netherlands.
  • 2 Department of Biomedical Data Sciences, Sequencing Analysis Support Core, Leiden University Medical Center, Leiden, 2300 RC, the Netherlands.
  • 3 Department of Medical Biochemistry and Biophysics, SciLifeLab and Karolinska Institute, Solna, 171 65, Sweden.
Abstract

Transforming growth factor (TGF)-β signaling enhances Cancer cell plasticity by inducing epithelial-to-mesenchymal transition (EMT). Here, we identified a TGF-β-induced long non-coding RNA, LIMD1 Antisense RNA 1 (LIMD1-AS1) that strengthens the SMAD-mediated transcriptional response to TGF-β. LIMD1-AS1 expression is upregulated in breast Cancer tissues compared to normal breast tissues, and high LIMD1-AS1 expression is associated with poor prognosis in breast Cancer patients. Depletion of LIMD1-AS1 hinders TGF-β-induced EMT, migration, and extravasation of breast Cancer cells. Mechanistically, LIMD1-AS1 promotes the interaction between SMAD3 and its transcriptional coactivator p300, thereby enhancing SMAD3 transcriptional activity and TGF-β/SMAD signaling. We demonstrated that LIMD1-AS1 binds to the MAD homology 2 (MH2) domain of SMAD3 and the interferon-binding domain (IBiD) of p300. Displacing LIMD1-AS1 from p300 by its competitor interferon regulatory factor 3 (IRF3) suppressed the effects of LIMD1-AS1 on potentiating TGF-β/SMAD signaling. Furthermore, blockage of p300 acetyltransferase activity with a pharmacological inhibitor A-485 reduced the ability of LIMD1-AS1 to enhance SMAD3 transcriptional activity, TGF-β-induced EMT, and migration. This study identifies LIMD1-AS1 as a novel stimulator of TGF-β signaling by establishing a positive feedback loop and highlights its potential as a therapeutic target for breast Cancer.

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