1. Gene
  2. TRIM6 - tripartite motif containing 6 Gene

TRIM6 - tripartite motif containing 6 Gene

中文名称:含三联基序 6

种属: Homo sapiens

同用名: RNF89

基因 ID: 117854 | 基因类型: protein coding

关于 TRIM6

Cytogenetic location: 11p15.4 Genomic coordinates (GRCh38): 11:5,596,111-5,612,952 (from NCBI)

This gene has 12 transcripts (splice variants), 76 orthologues and 80 paralogues. Broad expression in kidney (RPKM 10.6), testis (RPKM 6.4) and 15 other tissues.

功能概要

由该基因编码的蛋白质是三联基序 (TRIM) 家族的成员。 TRIM 基序包括三个锌结合域、一个 RING、B-box 1 型和 B-box 2 型域,以及一个卷曲螺旋区域。该蛋白质定位于细胞核,但其具体功能尚未确定。该基因被映射到染色体 11p15,位于 TRIM 基因簇内。可变剪接导致多个转录本变体。还观察到从该基因到下游 TRIM34 基因的通读转录本,这导致这些邻近家族成员的融合产物。[RefSeq 提供,2010 年 10 月]

The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, B-box type 1 and B-box type 2 domain, and a coiled-coil region. The protein localizes to the nucleus, but its specific function has not been identified. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. Alternative splicing results in multiple transcript variants. A read-through transcript from this gene into the downstream TRIM34 gene has also been observed, which results in a fusion product from these neighboring family members. [provided by RefSeq, Oct 2010]

TRIM6 基因产物(4)

mRNA Protein Name
NM_001003818.3 NP_001003818.1 tripartite motif-containing protein 6 isoform 1
NM_001198644.2 NP_001185573.1 tripartite motif-containing protein 6 isoform 3
NM_001198645.2 NP_001185574.1 tripartite motif-containing protein 6 isoform 3
NM_058166.5 NP_477514.1 tripartite motif-containing protein 6 isoform 2
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables identical protein binding IPI
IPI: 通过物理相互作用推断
17156811 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
25127057 GOA
enables protein kinase binding IPI
IPI: 通过物理相互作用推断
24882218 GOA
enables protein tyrosine kinase binding IPI
IPI: 通过物理相互作用推断
24882218 GOA
enables protein-macromolecule adaptor activity IPI
IPI: 通过物理相互作用推断
25127057 GOA
enables ubiquitin protein ligase activity IDA
IDA: 通过直接分析推断
28679761 GOA
enables ubiquitin protein ligase activity IMP
IMP: 通过突变表型推断
24882218 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in antiviral innate immune response IDA
IDA: 通过直接分析推断
35263596 GOA
involved in cellular response to interferon-beta IMP
IMP: 通过突变表型推断
24882218 GOA
involved in free ubiquitin chain polymerization IDA
IDA: 通过直接分析推断
35263596 GOA
involved in free ubiquitin chain polymerization IMP
IMP: 通过突变表型推断
24882218 GOA
involved in negative regulation of gene expression IMP
IMP: 通过突变表型推断
24882218 GOA
involved in negative regulation of viral genome replication IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of cytokine production involved in immune response IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of defense response to virus by host IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of peptidyl-serine phosphorylation IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of peptidyl-threonine phosphorylation IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of transcription regulatory region DNA binding IMP
IMP: 通过突变表型推断
24882218 GOA
involved in positive regulation of type I interferon-mediated signaling pathway IDA
IDA: 通过直接分析推断
24882218 GOA
involved in positive regulation of type I interferon-mediated signaling pathway IMP
IMP: 通过突变表型推断
24882218 GOA
involved in protein K48-linked ubiquitination IDA
IDA: 通过直接分析推断
24882218 GOA
NOT involved in regulation of non-canonical NF-kappaB signal transduction IMP
IMP: 通过突变表型推断
24882218 GOA
involved in response to lipopolysaccharide IMP
IMP: 通过突变表型推断
24882218 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
is active in cytoplasm IDA
IDA: 通过直接分析推断
35263596 GOA
located in cytoplasm IDA
IDA: 通过直接分析推断
17156811 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

TRIM6 蛋白结构

zf-C3HC4_4

zf-C3HC4_4: zinc finger of C3HC4-type, RING (15 - 59)

zf-B_box

zf-B_box: B-box zinc finger (95 - 130)

SPRY

SPRY: SPRY domain (352 - 481)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 488 a.a.
蛋白主名 其他名称

tripartite motif-containing protein 6

RING finger protein 89

直系同源

种属 基因名 来源 基因 ID
Felis catus TRIM6 VGNC VGNC:81100
Mus musculus TRIM6 MGD MGI:2137352
Rattus norvegicus TRIM6 RGD RGD:1310896
Macaca mulatta TRIM6 VGNC VGNC:110583